> For the complete documentation index, see [llms.txt](https://docs.imaps.goodwright.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.imaps.goodwright.com/workflows.md).

# Workflows

- [iCLIP](https://docs.imaps.goodwright.com/workflows/iclip.md)
- [Demultiplex and Analyse](https://docs.imaps.goodwright.com/workflows/iclip/demultiplex-and-analyse.md): When you have a multiplexed fastq file your first port of call for analysing iCLIP data will be the "Demultiplex and Analyse" workflow.
- [Primary Analysis](https://docs.imaps.goodwright.com/workflows/iclip/primary-analysis.md)